/*!

\if MANPAGES
\page dcmcrle Encode DICOM file to RLE transfer syntax
\else
\page dcmcrle dcmcrle: Encode DICOM file to RLE transfer syntax
\endif

\section dcmcrle_synopsis SYNOPSIS

\verbatim
dcmcrle [options] dcmfile-in dcmfile-out
\endverbatim

\section dcmcrle_description DESCRIPTION

The \b dcmcrle utility reads an uncompressed DICOM image (\e dcmfile-in),
performs RLE compression (i.e. conversion to an encapsulated DICOM transfer
syntax) and writes the converted image to an output file (\e dcmfile-out).

\section dcmcrle_parameters PARAMETERS

\verbatim
dcmfile-in   DICOM input filename to be converted

dcmfile-out  DICOM output filename
\endverbatim

\section dcmcrle_options OPTIONS

\subsection dcmcrle_general_options general options
\verbatim
  -h   --help
         print this help text and exit

       --version
         print version information and exit

       --arguments
         print expanded command line arguments

  -q   --quiet
         quiet mode, print no warnings and errors

  -v   --verbose
         verbose mode, print processing details

  -d   --debug
         debug mode, print debug information

  -ll  --log-level  [l]evel: string constant
         (fatal, error, warn, info, debug, trace)
         use level l for the logger

  -lc  --log-config  [f]ilename: string
         use config file f for the logger
\endverbatim

\subsection dcmcrle_input_options input options
\verbatim
input file format:

  +f   --read-file
         read file format or data set (default)

  +fo  --read-file-only
         read file format only

  -f   --read-dataset
         read data set without file meta information

input transfer syntax:

  -t=  --read-xfer-auto
         use TS recognition (default)

  -td  --read-xfer-detect
         ignore TS specified in the file meta header

  -te  --read-xfer-little
         read with explicit VR little endian TS

  -tb  --read-xfer-big
         read with explicit VR big endian TS

  -ti  --read-xfer-implicit
         read with implicit VR little endian TS
\endverbatim

\subsection dcmcrle_enc_pix_data_encoding_opt encapsulated pixel data encoding options
\verbatim
pixel data fragmentation:

  +ff  --fragment-per-frame
         encode each frame as one fragment (default)

  +fs  --fragment-size  [s]ize: integer
         limit fragment size to s kbytes (non-standard)

basic offset table encoding:

  +ot  --offset-table-create
         create offset table (default)

  -ot  --offset-table-empty
         leave offset table empty

SOP Class UID:

  +cd  --class-default
         keep SOP Class UID (default)

  +cs  --class-sc
         convert to Secondary Capture Image (implies --uid-always)

SOP Instance UID:
  +un  --uid-never
         never assign new UID (default)

  +ua  --uid-always
         always assign new UID
\endverbatim

\subsection dcmcrle_output_options output options
\verbatim
post-1993 value representations:

  +u   --enable-new-vr
         enable support for new VRs (UN/UT) (default)

  -u   --disable-new-vr
         disable support for new VRs, convert to OB

group length encoding:

  +g=  --group-length-recalc
         recalculate group lengths if present (default)

  +g   --group-length-create
         always write with group length elements

  -g   --group-length-remove
         always write without group length elements

length encoding in sequences and items:

  +e   --length-explicit
         write with explicit lengths (default)

  -e   --length-undefined
         write with undefined lengths

data set trailing padding:

  -p=  --padding-retain
         do not change padding (default)

  -p   --padding-off
         no padding

  +p   --padding-create  [f]ile-pad [i]tem-pad: integer
         align file on multiple of f bytes
         and items on multiple of i bytes
\endverbatim

\section dcmcrle_notes NOTES

Please note that the DICOM standard does not allow for storing the pixel data
with multiple fragments per frame (when RLE compression is used).  So limiting
the fragment size with option \e --fragment-size (or \e +fs) may result in a
non-standard conformant DICOM image.

\section dcmcrle_transfer_syntaxes TRANSFER SYNTAXES

\b dcmcrle supports the following transfer syntaxes for input
(\e dcmfile-in):

\verbatim
LittleEndianImplicitTransferSyntax             1.2.840.10008.1.2
LittleEndianExplicitTransferSyntax             1.2.840.10008.1.2.1
DeflatedExplicitVRLittleEndianTransferSyntax   1.2.840.10008.1.2.1.99 (*)
BigEndianExplicitTransferSyntax                1.2.840.10008.1.2.2
\endverbatim

(*) if compiled with zlib support enabled

\b dcmcrle supports the following transfer syntaxes for output
(\e dcmfile-out):

\verbatim
RLELosslessTransferSyntax                      1.2.840.10008.1.2.5
\endverbatim

\section dcmcrle_logging LOGGING

The level of logging output of the various command line tools and underlying
libraries can be specified by the user.  By default, only errors and warnings
are written to the standard error stream.  Using option \e --verbose also
informational messages like processing details are reported.  Option
\e --debug can be used to get more details on the internal activity, e.g. for
debugging purposes.  Other logging levels can be selected using option
\e --log-level.  In \e --quiet mode only fatal errors are reported.  In such
very severe error events, the application will usually terminate.  For more
details on the different logging levels, see documentation of module "oflog".

In case the logging output should be written to file (optionally with logfile
rotation), to syslog (Unix) or the event log (Windows) option \e --log-config
can be used.  This configuration file also allows for directing only certain
messages to a particular output stream and for filtering certain messages
based on the module or application where they are generated.  An example
configuration file is provided in <em>\<etcdir\>/logger.cfg</em>.

\section dcmcrle_command_line COMMAND LINE

All command line tools use the following notation for parameters: square
brackets enclose optional values (0-1), three trailing dots indicate that
multiple values are allowed (1-n), a combination of both means 0 to n values.

Command line options are distinguished from parameters by a leading '+' or '-'
sign, respectively.  Usually, order and position of command line options are
arbitrary (i.e. they can appear anywhere).  However, if options are mutually
exclusive the rightmost appearance is used.  This behavior conforms to the
standard evaluation rules of common Unix shells.

In addition, one or more command files can be specified using an '@' sign as a
prefix to the filename (e.g. <em>\@command.txt</em>).  Such a command argument
is replaced by the content of the corresponding text file (multiple
whitespaces are treated as a single separator unless they appear between two
quotation marks) prior to any further evaluation.  Please note that a command
file cannot contain another command file.  This simple but effective approach
allows one to summarize common combinations of options/parameters and avoids
longish and confusing command lines (an example is provided in file
<em>\<datadir\>/dumppat.txt</em>).

\section dcmcrle_environment ENVIRONMENT

The \b dcmcrle utility will attempt to load DICOM data dictionaries specified
in the \e DCMDICTPATH environment variable.  By default, i.e. if the
\e DCMDICTPATH environment variable is not set, the file
<em>\<datadir\>/dicom.dic</em> will be loaded unless the dictionary is built
into the application (default for Windows).

The default behavior should be preferred and the \e DCMDICTPATH environment
variable only used when alternative data dictionaries are required.  The
\e DCMDICTPATH environment variable has the same format as the Unix shell
\e PATH variable in that a colon (":") separates entries.  On Windows systems,
a semicolon (";") is used as a separator.  The data dictionary code will
attempt to load each file specified in the \e DCMDICTPATH environment variable.
It is an error if no data dictionary can be loaded.

\section dcmcrle_see_also SEE ALSO

<b>dcmdrle</b>(1)

\section dcmcrle_copyright COPYRIGHT

Copyright (C) 2002-2014 by OFFIS e.V., Escherweg 2, 26121 Oldenburg, Germany.

*/
